PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28492.m000479
Common NameLOC8279702, RCOM_0259850
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 519aa    MW: 58016.8 Da    PI: 6.3579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28492.m000479genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.62.1e-1061575141374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                    l++lL+ecA a+s ++l +a+++L +l ++asp+g +  +R++ayf++A+a+r+ +s+ ++++ l   +t       + +a+++f++vsP++kf+h
  28492.m000479 157 LISLLFECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVAYFAKAMASRVINSWLGICSPLINHKT-------VHSAFQVFNNVSPFIKFAH 245
                    5799*******************************9999***********************87755444.......56899************** PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    ++ Nq Ilea+++ +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+g     s + l etg++L++fA++lg++fef++ +ak++ ++++
  28492.m000479 246 FISNQEILEAFQRRDRVHIIDLDIMQGLQWPALFHILATRMEGPPHIRMTGMGT----SMDLLVETGKQLSNFAKRLGLSFEFHP-IAKKFGEIDV 336
                    ******************************************************....***************************.7********* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++  +++gE+laV++    h+l+d +++  +    +++l+ +lsP+++++veq+++h ++sFl+rf+ +l+yys+lfdsl a lp +++ r+ vE+
  28492.m000479 337 SMVPLRRGETLAVHWLQ--HSLYDATGPDWK----TMRLLEELSPRIMTLVEQDISH-GGSFLDRFVGSLHYYSTLFDSLGAFLPCDDSSRHRVEH 425
                    ****************9..999999999888....**********************.789*********************************** PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerlee..aGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ll rei nv+a  g +r  +  +l++Wr+ l +    F +vp+s + ++qa+l+l++++  +gy++ + +g+l lgWkd +L+++SaW+
  28492.m000479 426 CLLYREINNVLAIGGPARSGED-KLRHWRSELAArsTSFMQVPMSGNSMAQAQLILNMFPpAHGYSLAQGEGALRLGWKDTSLFTASAWT 514
                    *****************77665.5******99654489***************************************************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.93131493IPR005202Transcription factor GRAS
PfamPF035147.2E-104157514IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MKAGYEVVNG AIDMMQTHEA WDYGSSVGFQ AAAASNSFPK QVVTNLERNE LSEWVEHVTR  60
QLIDDMPDTP SDHSLQTDTA MVCNEDSSNN NVVPSLLTSD SRPRKALKRS HFDGAYSIHE  120
EELQWSNIEL GNQIRINENG ASNGRGLSRI DEHGLNLISL LFECAVAISV DNLGEAHRML  180
LELTQMASPY GPSCAERVVA YFAKAMASRV INSWLGICSP LINHKTVHSA FQVFNNVSPF  240
IKFAHFISNQ EILEAFQRRD RVHIIDLDIM QGLQWPALFH ILATRMEGPP HIRMTGMGTS  300
MDLLVETGKQ LSNFAKRLGL SFEFHPIAKK FGEIDVSMVP LRRGETLAVH WLQHSLYDAT  360
GPDWKTMRLL EELSPRIMTL VEQDISHGGS FLDRFVGSLH YYSTLFDSLG AFLPCDDSSR  420
HRVEHCLLYR EINNVLAIGG PARSGEDKLR HWRSELAARS TSFMQVPMSG NSMAQAQLIL  480
NMFPPAHGYS LAQGEGALRL GWKDTSLFTA SAWTSLASR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-441575134374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529844.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E91e-140SCR_IPONI; Protein SCARECROW
SwissprotQ9M3841e-140SCR_ARATH; Protein SCARECROW
TrEMBLB9SV250.0B9SV25_RICCO; DELLA protein GAIP, putative
STRINGPOPTR_0002s03740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117873138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-141GRAS family protein